IL_9OFV_091

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

9OFV|1|f|U|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_091 not in the Motif Atlas

Geometric match to IL_8CRE_098

Geometric discrepancy: 0.0434

The information below is about IL_8CRE_098

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9OFV|1|f|G|2409
9OFV|1|f|U|2410
9OFV|1|f|U|2411
*
9OFV|1|f|A|2811
9OFV|1|f|C|2812

Current chains

Chain f

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L28

Chain l

Large ribosomal subunit protein uL4A