IL_9OFV_094

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

9OFV|1|f|A|2502

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_094 not in the Motif Atlas

Geometric match to IL_9DFE_002

Geometric discrepancy: 0.1865

The information below is about IL_9DFE_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9OFV|1|f|C|2444
9OFV|1|f|A|2445
*
9OFV|1|f|U|2501
9OFV|1|f|A|2502
9OFV|1|f|G|2503

Current chains

Chain f

25S rRNA

Nearby chains

Chain V

60S ribosomal protein L36-A

Chain p

60S ribosomal protein L8-A