IL_9OFV_103

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_103 not in the Motif Atlas

Geometric match to IL_8P9A_331

Geometric discrepancy: 0.079

The information below is about IL_8P9A_331

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46637.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

21

Unit IDs

9OFV|1|f|U|2826
9OFV|1|f|U|2827
9OFV|1|f|G|2828
*
9OFV|1|f|U|2862
9OFV|1|f|G|2863

Current chains

Chain f

25S rRNA

Nearby chains

Chain r

Large ribosomal subunit protein uL16

Chain x

Transfer RNA; tRNA