IL_9OFV_116
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OFV_116 not in the Motif Atlas
- Geometric match to IL_8P9A_344
- Geometric discrepancy: 0.0697
- The information below is about IL_8P9A_344
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
9OFV|1|f|C|3018
9OFV|1|f|U|3019
9OFV|1|f|U|3020
9OFV|1|f|A|3021
9OFV|1|f|G|3022
9OFV|1|f|U|3023
9OFV|1|f|A|3024
9OFV|1|f|C|3025
*
9OFV|1|f|G|3030
9OFV|1|f|G|3031
9OFV|1|f|A|3032
9OFV|1|f|A|3033
9OFV|1|f|C|3034
9OFV|1|f|A|3035
9OFV|1|f|G|3036
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L23-A
- Chain Z
- Ubiquitin-60S ribosomal protein L40
- Chain a
- Ribosome quality control complex subunit 2
- Chain e
- E3 ubiquitin-protein ligase listerin
- Chain g
- Eukaryotic translation initiation factor 6
- Chain k
- Large ribosomal subunit protein uL3
- Chain q
- 60S ribosomal protein L9-A
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