IL_9OFV_117

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

9OFV|1|f|C|3092, 9OFV|1|f|C|3093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_117 not in the Motif Atlas

Geometric match to IL_8P9A_345

Geometric discrepancy: 0.0957

The information below is about IL_8P9A_345

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

9OFV|1|f|U|3047
9OFV|1|f|A|3048
9OFV|1|f|A|3049
9OFV|1|f|U|3050
9OFV|1|f|U|3051
*
9OFV|1|f|A|3091
9OFV|1|f|C|3092
9OFV|1|f|C|3093
9OFV|1|f|A|3094

Current chains

Chain f

25S rRNA

Nearby chains

Chain 9

Large ribosomal subunit protein eL24A

Chain I

60S ribosomal protein L23-A

Chain k

Large ribosomal subunit protein uL3