IL_9OFV_125

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

9OFV|1|f|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_125 not in the Motif Atlas

Geometric match to IL_5J7L_298

Geometric discrepancy: 0.2273

The information below is about IL_5J7L_298

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9OFV|1|f|C|3193
9OFV|1|f|C|3194
*
9OFV|1|f|G|3197
9OFV|1|f|U|3198
9OFV|1|f|G|3199

Current chains

Chain f

25S rRNA

Nearby chains

Chain q

60S ribosomal protein L9-A

Chain u

60S ribosomal protein L14-A