IL_9OFV_132

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

9OFV|1|f|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_132 not in the Motif Atlas

Geometric match to IL_8CRE_138

Geometric discrepancy: 0.0755

The information below is about IL_8CRE_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43622.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9OFV|1|f|G|3328
9OFV|1|f|U|3329
9OFV|1|f|A|3330
*
9OFV|1|f|U|3373
9OFV|1|f|U|3374
9OFV|1|f|A|3375
9OFV|1|f|A|3376
9OFV|1|f|G|3377
9OFV|1|f|C|3378

Current chains

Chain f

25S rRNA

Nearby chains

Chain 9

Large ribosomal subunit protein eL24A

Chain Q

60S ribosomal protein L31-A

Chain k

Large ribosomal subunit protein uL3