IL_9OFV_135

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_135 not in the Motif Atlas

Geometric match to IL_8CRE_141

Geometric discrepancy: 0.1285

The information below is about IL_8CRE_141

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

9OFV|1|f|A|3342
9OFV|1|f|G|3343
9OFV|1|f|A|3344
9OFV|1|f|G|3345
*
9OFV|1|f|C|3360
9OFV|1|f|G|3361
9OFV|1|f|A|3362
9OFV|1|f|U|3363

Current chains

Chain f

25S rRNA

Nearby chains

Chain 5

60S ribosomal protein L19-A