IL_9OFV_142
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 9OFV|1|h|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OFV_142 not in the Motif Atlas
- Geometric match to IL_8P9A_369
- Geometric discrepancy: 0.0608
- The information below is about IL_8P9A_369
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
9OFV|1|h|A|72
9OFV|1|h|C|73
9OFV|1|h|C|74
9OFV|1|h|G|75
9OFV|1|h|A|76
9OFV|1|h|G|77
9OFV|1|h|U|78
9OFV|1|h|A|79
9OFV|1|h|G|80
*
9OFV|1|h|C|100
9OFV|1|h|G|101
9OFV|1|h|A|102
9OFV|1|h|A|103
9OFV|1|h|A|104
9OFV|1|h|C|105
9OFV|1|h|U|106
Current chains
- Chain h
- 5S rRNA
Nearby chains
- Chain 6
- 60S ribosomal protein L20-A
- Chain 7
- 60S ribosomal protein L21-A
- Chain f
- Large subunit ribosomal RNA; LSU rRNA
- Chain o
- 60S ribosomal protein L7-A
- Chain r
- Large ribosomal subunit protein uL16
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