IL_9OGY_009

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

9OGY|1|2|G|113

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OGY_009 not in the Motif Atlas

Homologous match to IL_9H3G_163

Geometric discrepancy: 0.2703

The information below is about IL_9H3G_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

9OGY|1|2|U|112
9OGY|1|2|G|113
9OGY|1|2|G|114
9OGY|1|2|U|115
*
9OGY|1|2|A|348
9OGY|1|2|A|349

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain J

40S ribosomal protein S8

Chain M

Ribosomal protein S11