IL_9OGY_018

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

9OGY|1|2|U|368, 9OGY|1|2|C|369, 9OGY|1|2|G|370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OGY_018 not in the Motif Atlas

Geometric match to IL_8GLP_211

Geometric discrepancy: 0.1912

The information below is about IL_8GLP_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.3

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

9OGY|1|2|U|366
9OGY|1|2|U|367
9OGY|1|2|U|368
9OGY|1|2|C|369
9OGY|1|2|G|370
9OGY|1|2|A|371
*
9OGY|1|2|U|393
9OGY|1|2|G|394

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S8

Chain M

Ribosomal protein S11