IL_9OGY_020

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OGY_020 not in the Motif Atlas

Homologous match to IL_9PN5_162

Geometric discrepancy: 0.2569

The information below is about IL_9PN5_162

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

9OGY|1|2|G|437
9OGY|1|2|G|438
9OGY|1|2|A|439
*
9OGY|1|2|U|454
9OGY|1|2|A|455
9OGY|1|2|C|456

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S6

Chain J

40S ribosomal protein S8