IL_9OGY_028

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OGY_028 not in the Motif Atlas

Geometric match to IL_8GLP_220

Geometric discrepancy: 0.2824

The information below is about IL_8GLP_220

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9OGY|1|2|U|566
9OGY|1|2|C|567
9OGY|1|2|C|568
9OGY|1|2|A|569
*
9OGY|1|2|U|581
9OGY|1|2|U|582
9OGY|1|2|A|583
9OGY|1|2|A|584

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Ribosomal protein S9 (Predicted)

Chain Z

eS24