IL_9OGY_034

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|C|676
9OGY|1|2|G|677
9OGY|1|2|U|678
9OGY|1|2|A|679
9OGY|1|2|G|680
*
9OGY|1|2|U|1025
9OGY|1|2|C|1026
9OGY|1|2|A|1027
9OGY|1|2|A|1028
9OGY|1|2|G|1029

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

Ribosomal protein S11

Chain O

Ribosomal protein S13

Chain X

Ribosomal protein S15a

Chain Y

uS12