IL_9OGY_043

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

9OGY|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OGY_043 not in the Motif Atlas

Homologous match to IL_9PN5_183

Geometric discrepancy: 0.3776

The information below is about IL_9PN5_183

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9OGY|1|2|G|925
9OGY|1|2|A|926
9OGY|1|2|C|927
*
9OGY|1|2|G|1014
9OGY|1|2|U|1015
9OGY|1|2|U|1016
9OGY|1|2|U|1017

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

Ribosomal protein S13

Chain X

Ribosomal protein S15a

Chain c

40S ribosomal protein S27