IL_9OGY_045

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

9OGY|1|2|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OGY_045 not in the Motif Atlas

Homologous match to IL_9PN5_185

Geometric discrepancy: 0.1715

The information below is about IL_9PN5_185

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

9OGY|1|2|C|931
9OGY|1|2|G|932
9OGY|1|2|G|933
9OGY|1|2|G|934
9OGY|1|2|G|935
*
9OGY|1|2|C|1007
9OGY|1|2|A|1008
9OGY|1|2|A|1009
9OGY|1|2|G|1010

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S3a

Chain O

Ribosomal protein S13

Chain b

eS26