IL_9OGY_053

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGAGUAUGG*CUGAAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|G|1168
9OGY|1|2|G|1169
9OGY|1|2|A|1170
9OGY|1|2|G|1171
9OGY|1|2|U|1172
9OGY|1|2|A|1173
9OGY|1|2|U|1174
9OGY|1|2|G|1175
9OGY|1|2|G|1176
*
9OGY|1|2|C|1185
9OGY|1|2|U|1186
9OGY|1|2|G|1187
9OGY|1|2|A|1188
9OGY|1|2|A|1189
9OGY|1|2|A|1190
9OGY|1|2|C|1191

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Y

uS12

Chain n

eL41