IL_9OGY_058

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

ACAGGAUUGACAG*CUUUCUCGAUU

Length

24 nucleotides

Bulged bases

9OGY|1|2|G|1285

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|A|1282
9OGY|1|2|C|1283
9OGY|1|2|A|1284
9OGY|1|2|G|1285
9OGY|1|2|G|1286
9OGY|1|2|A|1287
9OGY|1|2|U|1288
9OGY|1|2|U|1289
9OGY|1|2|G|1290
9OGY|1|2|A|1291
9OGY|1|2|C|1292
9OGY|1|2|A|1293
9OGY|1|2|G|1294
*
9OGY|1|2|C|1305
9OGY|1|2|U|1306
9OGY|1|2|U|1307
9OGY|1|2|U|1308
9OGY|1|2|C|1309
9OGY|1|2|U|1310
9OGY|1|2|C|1311
9OGY|1|2|G|1312
9OGY|1|2|A|1313
9OGY|1|2|U|1314
9OGY|1|2|U|1315

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

S10_plectin domain-containing protein

Chain N

40S ribosomal protein S12

Chain Q

uS19

Chain e

eS29

Chain g

eS31