IL_9OGY_067

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

ACUAGUU*AACUUCU

Length

14 nucleotides

Bulged bases

9OGY|1|2|C|1403, 9OGY|1|2|U|1404

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|A|1402
9OGY|1|2|C|1403
9OGY|1|2|U|1404
9OGY|1|2|A|1405
9OGY|1|2|G|1406
9OGY|1|2|U|1407
9OGY|1|2|U|1408
*
9OGY|1|2|A|1438
9OGY|1|2|A|1439
9OGY|1|2|C|1440
9OGY|1|2|U|1441
9OGY|1|2|U|1442
9OGY|1|2|C|1443
9OGY|1|2|U|1444

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein S16

Chain V

uS10