IL_9OGY_072

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

9OGY|1|2|C|1553, 9OGY|1|2|A|1580, 9OGY|1|2|C|1581

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|G|1550
9OGY|1|2|U|1551
9OGY|1|2|G|1552
9OGY|1|2|C|1553
9OGY|1|2|C|1554
9OGY|1|2|U|1555
9OGY|1|2|A|1556
9OGY|1|2|C|1557
9OGY|1|2|C|1558
*
9OGY|1|2|G|1577
9OGY|1|2|U|1578
9OGY|1|2|A|1579
9OGY|1|2|A|1580
9OGY|1|2|C|1581
9OGY|1|2|C|1582

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein S3

Chain L

S10_plectin domain-containing protein

Chain V

uS10

Chain e

eS29