IL_9OGY_074

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

9OGY|1|2|C|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|G|1604
9OGY|1|2|G|1605
9OGY|1|2|G|1606
9OGY|1|2|A|1607
9OGY|1|2|U|1608
9OGY|1|2|C|1609
9OGY|1|2|G|1610
*
9OGY|1|2|C|1629
9OGY|1|2|A|1630
9OGY|1|2|U|1631
9OGY|1|2|G|1632
9OGY|1|2|A|1633
9OGY|1|2|A|1634
9OGY|1|2|C|1635

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Ribosomal protein S5

Chain T

uS13

Chain U

eS19