IL_9OGY_075

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCCCGUCGCU*AAAAGUCGUAAC

Length

22 nucleotides

Bulged bases

9OGY|1|2|A|1825

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|G|1702
9OGY|1|2|C|1703
9OGY|1|2|C|1704
9OGY|1|2|C|1705
9OGY|1|2|G|1706
9OGY|1|2|U|1707
9OGY|1|2|C|1708
9OGY|1|2|G|1709
9OGY|1|2|C|1710
9OGY|1|2|U|1711
*
9OGY|1|2|A|1822
9OGY|1|2|A|1823
9OGY|1|2|A|1824
9OGY|1|2|A|1825
9OGY|1|2|G|1826
9OGY|1|2|U|1827
9OGY|1|2|C|1828
9OGY|1|2|G|1829
9OGY|1|2|U|1830
9OGY|1|2|A|1831
9OGY|1|2|A|1832
9OGY|1|2|C|1833

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Y

uS12

Chain n

eL41