IL_9OGY_076

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UACCGAU*AGAGGAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|U|1714
9OGY|1|2|A|1715
9OGY|1|2|C|1716
9OGY|1|2|C|1717
9OGY|1|2|G|1718
9OGY|1|2|A|1719
9OGY|1|2|U|1720
*
9OGY|1|2|A|1813
9OGY|1|2|G|1814
9OGY|1|2|A|1815
9OGY|1|2|G|1816
9OGY|1|2|G|1817
9OGY|1|2|A|1818
9OGY|1|2|A|1819

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Y

uS12

Chain n

eL41