IL_9OJM_005

3D structure

PDB id

9OJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial 28S PIC with tRNA and mtIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AA*UAU

Length

5 nucleotides

Bulged bases

9OJM|1|A|A|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OJM_005 not in the Motif Atlas

Homologous match to IL_6CZR_114

Geometric discrepancy: 0.341

The information below is about IL_6CZR_114

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

9OJM|1|A|A|685
9OJM|1|A|A|686
*
9OJM|1|A|U|859
9OJM|1|A|A|860
9OJM|1|A|U|861

Current chains

Chain A

12S mitochondrial RNA

Nearby chains

Chain 7

Translation initiation factor IF-2, mitochondrial

Chain M

Small ribosomal subunit protein bS16m

Chain T

Small ribosomal subunit protein mS25