IL_9OJM_021

3D structure

PDB id

9OJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial 28S PIC with tRNA and mtIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AUCACCCCCUCCCCAAU*AACAUAU

Length

24 nucleotides

Bulged bases

9OJM|1|A|C|954, 9OJM|1|A|C|959, 9OJM|1|A|C|960, 9OJM|1|A|U|961, 9OJM|1|A|A|966, 9OJM|1|A|A|1041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OJM|1|A|A|952
9OJM|1|A|U|953
9OJM|1|A|C|954
9OJM|1|A|A|955
9OJM|1|A|C|956
9OJM|1|A|C|957
9OJM|1|A|C|958
9OJM|1|A|C|959
9OJM|1|A|C|960
9OJM|1|A|U|961
9OJM|1|A|C|962
9OJM|1|A|C|963
9OJM|1|A|C|964
9OJM|1|A|C|965
9OJM|1|A|A|966
9OJM|1|A|A|967
9OJM|1|A|U|968
*
9OJM|1|A|A|1036
9OJM|1|A|A|1037
9OJM|1|A|C|1038
9OJM|1|A|A|1039
9OJM|1|A|U|1040
9OJM|1|A|A|1041
9OJM|1|A|U|1042

Current chains

Chain A

12S mitochondrial RNA

Nearby chains

Chain 2

Coiled-coil-helix-coiled-coil-helix domain-containing protein 1

Chain E

28S ribosomal protein S6, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial

Chain L

Small ribosomal subunit protein uS15m

Chain N

Small ribosomal subunit protein uS17m

Chain P

28S ribosomal protein S18c, mitochondrial

Chain S

28S ribosomal protein S23, mitochondrial

Chain T

Small ribosomal subunit protein mS25

Chain U

Small ribosomal subunit protein mS26