3D structure

PDB id
9OJM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human mitochondrial 28S PIC with tRNA and mtIF2
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
UAAAACU*ACACAAA
Length
14 nucleotides
Bulged bases
9OJM|1|A|C|1011
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9OJM|1|A|U|974
9OJM|1|A|A|975
9OJM|1|A|A|976
9OJM|1|A|A|977
9OJM|1|A|A|978
9OJM|1|A|C|979
9OJM|1|A|U|980
*
9OJM|1|A|A|1008
9OJM|1|A|C|1009
9OJM|1|A|A|1010
9OJM|1|A|C|1011
9OJM|1|A|A|1012
9OJM|1|A|A|1013
9OJM|1|A|A|1014

Current chains

Chain A
12S mitochondrial RNA

Nearby chains

Chain E
28S ribosomal protein S6, mitochondrial
Chain I
Small ribosomal subunit protein uS11m
Chain P
28S ribosomal protein S18c, mitochondrial
Chain Q
28S ribosomal protein S21, mitochondrial

Coloring options:

Copyright 2026 BGSU RNA group. Database contents are licensed under Creative Commons Attribution 4.0 International (CC BY 4.0). Page generated in 0.0497 s