IL_9OJM_023

3D structure

PDB id

9OJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial 28S PIC with tRNA and mtIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

ACC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OJM_023 not in the Motif Atlas

Geometric match to IL_8OI5_023

Geometric discrepancy: 0.1035

The information below is about IL_8OI5_023

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9OJM|1|A|A|982
9OJM|1|A|C|983
9OJM|1|A|C|984
*
9OJM|1|A|G|1004
9OJM|1|A|U|1005
9OJM|1|A|U|1006

Current chains

Chain A

12S mitochondrial RNA

Nearby chains

Chain E

28S ribosomal protein S6, mitochondrial

Chain I

Small ribosomal subunit protein uS11m

Chain Q

28S ribosomal protein S21, mitochondrial