IL_9OJM_046
3D structure
- PDB id
- 9OJM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial 28S PIC with tRNA and mtIF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CACCC*GACAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OJM_046 not in the Motif Atlas
- Homologous match to IL_6CZR_167
- Geometric discrepancy: 0.595
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
9OJM|1|A|C|1491
9OJM|1|A|A|1492
9OJM|1|A|C|1493
9OJM|1|A|C|1494
9OJM|1|A|C|1495
*
9OJM|1|A|G|1554
9OJM|1|A|A|1555
9OJM|1|A|C|1556
9OJM|1|A|A|1557
9OJM|1|A|A|1558
9OJM|1|A|G|1559
Current chains
- Chain A
- 12S mitochondrial RNA
Nearby chains
- Chain 3
- Small ribosomal subunit protein mS38
- Chain 6
- mRNA (5'-R(P*AP*UP*GP*U)-3')
- Chain 7
- Translation initiation factor IF-2, mitochondrial
- Chain J
- 28S ribosomal protein S12, mitochondrial
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