IL_9OJM_048

3D structure

PDB id

9OJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial 28S PIC with tRNA and mtIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

ACUU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OJM_048 not in the Motif Atlas

Geometric match to IL_8CRE_475

Geometric discrepancy: 0.1243

The information below is about IL_8CRE_475

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9OJM|1|A|A|1507
9OJM|1|A|C|1508
9OJM|1|A|U|1509
9OJM|1|A|U|1510
*
9OJM|1|A|A|1540
9OJM|1|A|U|1541
9OJM|1|A|U|1542
9OJM|1|A|U|1543

Current chains

Chain A

12S mitochondrial RNA

Nearby chains

Chain 0

Small ribosomal subunit protein mS34

Chain 3

Small ribosomal subunit protein mS38

Chain 7

Translation initiation factor IF-2, mitochondrial