IL_9OJM_049

3D structure

PDB id

9OJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial 28S PIC with tRNA and mtIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UC*GCA

Length

5 nucleotides

Bulged bases

9OJM|1|A|C|1539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OJM_049 not in the Motif Atlas

Geometric match to IL_8GLP_269

Geometric discrepancy: 0.3915

The information below is about IL_8GLP_269

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9OJM|1|A|U|1510
9OJM|1|A|C|1511
*
9OJM|1|A|G|1538
9OJM|1|A|C|1539
9OJM|1|A|A|1540

Current chains

Chain A

12S mitochondrial RNA

Nearby chains

Chain 0

Small ribosomal subunit protein mS34

Chain 3

Small ribosomal subunit protein mS38