IL_9OV6_003

3D structure

PDB id

9OV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9OV6|1|A|U|179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OV6_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.4894

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9OV6|1|A|G|144
9OV6|1|A|G|145
9OV6|1|A|A|146
9OV6|1|A|A|147
9OV6|1|A|A|148
9OV6|1|A|G|149
*
9OV6|1|A|C|176
9OV6|1|A|G|177
9OV6|1|A|A|178
9OV6|1|A|U|179
9OV6|1|A|U|180
9OV6|1|A|A|181
9OV6|1|A|C|182

Current chains

Chain A

RNase P RNA component

Nearby chains