IL_9OV7_003

3D structure

PDB id

9OV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.27 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9OV7|1|A|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OV7_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.4997

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9OV7|1|A|G|144
9OV7|1|A|G|145
9OV7|1|A|A|146
9OV7|1|A|A|147
9OV7|1|A|A|148
9OV7|1|A|G|149
*
9OV7|1|A|C|176
9OV7|1|A|G|177
9OV7|1|A|A|178
9OV7|1|A|U|179
9OV7|1|A|U|180
9OV7|1|A|A|181
9OV7|1|A|C|182

Current chains

Chain A

RNase P ribozyme

Nearby chains