IL_9OVC_002

3D structure

PDB id

9OVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in 10 mM Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9OVC|1|A|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OVC_002 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.5428

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9OVC|1|A|G|144
9OVC|1|A|G|145
9OVC|1|A|A|146
9OVC|1|A|A|147
9OVC|1|A|A|148
9OVC|1|A|G|149
*
9OVC|1|A|C|176
9OVC|1|A|G|177
9OVC|1|A|A|178
9OVC|1|A|U|179
9OVC|1|A|U|180
9OVC|1|A|A|181
9OVC|1|A|C|182

Current chains

Chain A

RNase P ribozyme

Nearby chains