IL_9OVC_003

3D structure

PDB id

9OVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in 10 mM Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

9OVC|1|A|A|239, 9OVC|1|A|A|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OVC_003 not in the Motif Atlas

Homologous match to IL_1NBS_009

Geometric discrepancy: 0.3804

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

9OVC|1|A|U|191
9OVC|1|A|G|192
*
9OVC|1|A|U|238
9OVC|1|A|A|239
9OVC|1|A|A|240
9OVC|1|A|A|241

Current chains

Chain A

RNase P ribozyme

Nearby chains