IL_9OWJ_005

3D structure

PDB id

9OWJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA in 5 mM Ca2+

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

9OWJ|1|A|A|239, 9OWJ|1|A|A|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OWJ_005 not in the Motif Atlas

Homologous match to IL_1NBS_009

Geometric discrepancy: 0.2629

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

9OWJ|1|A|U|191
9OWJ|1|A|G|192
*
9OWJ|1|A|U|238
9OWJ|1|A|A|239
9OWJ|1|A|A|240
9OWJ|1|A|A|241

Current chains

Chain A

RNase P RNA component

Nearby chains

Chain C

Transfer RNA; tRNA