IL_9OWL_003

3D structure

PDB id

9OWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 5 mM Ca2+

Experimental method

ELECTRON MICROSCOPY

Resolution

2.99 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9OWL|1|A|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OWL_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.4813

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9OWL|1|A|G|144
9OWL|1|A|G|145
9OWL|1|A|A|146
9OWL|1|A|A|147
9OWL|1|A|A|148
9OWL|1|A|G|149
*
9OWL|1|A|C|176
9OWL|1|A|G|177
9OWL|1|A|A|178
9OWL|1|A|U|179
9OWL|1|A|U|180
9OWL|1|A|A|181
9OWL|1|A|C|182

Current chains

Chain A

RNase P RNA component

Nearby chains