IL_9OWM_002

3D structure

PDB id

9OWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 10 mM Ca2+

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

9OWM|1|A|A|137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OWM_002 not in the Motif Atlas

Homologous match to IL_1NBS_005

Geometric discrepancy: 0.2147

The information below is about IL_1NBS_005

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9OWM|1|A|G|114
9OWM|1|A|C|115
*
9OWM|1|A|G|136
9OWM|1|A|A|137
9OWM|1|A|C|138

Current chains

Chain A

RNase P RNA component

Nearby chains

Chain C

Transfer RNA; tRNA