IL_9OWO_002

3D structure

PDB id

9OWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA with non-complementary 5' leader (sub-conformation 1 of tRNA anticodon arm tilted)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

9OWO|1|A|A|137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OWO_002 not in the Motif Atlas

Homologous match to IL_1NBS_005

Geometric discrepancy: 0.2025

The information below is about IL_1NBS_005

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9OWO|1|A|G|114
9OWO|1|A|C|115
*
9OWO|1|A|G|136
9OWO|1|A|A|137
9OWO|1|A|C|138

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain C

Transfer RNA; tRNA