IL_9OWP_003

3D structure

PDB id

9OWP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA with non-complementary 5' leader (sub-conformation 2 of tRNA anticodon arm tilted)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9OWP|1|A|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OWP_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.4976

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9OWP|1|A|G|144
9OWP|1|A|G|145
9OWP|1|A|A|146
9OWP|1|A|A|147
9OWP|1|A|A|148
9OWP|1|A|G|149
*
9OWP|1|A|C|176
9OWP|1|A|G|177
9OWP|1|A|A|178
9OWP|1|A|U|179
9OWP|1|A|U|180
9OWP|1|A|A|181
9OWP|1|A|C|182

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains