IL_9OWQ_003

3D structure

PDB id

9OWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA with loop-back 5' leader

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9OWQ|1|A|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OWQ_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.4865

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9OWQ|1|A|G|144
9OWQ|1|A|G|145
9OWQ|1|A|A|146
9OWQ|1|A|A|147
9OWQ|1|A|A|148
9OWQ|1|A|G|149
*
9OWQ|1|A|C|176
9OWQ|1|A|G|177
9OWQ|1|A|A|178
9OWQ|1|A|U|179
9OWQ|1|A|U|180
9OWQ|1|A|A|181
9OWQ|1|A|C|182

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains