IL_9OWS_004

3D structure

PDB id

9OWS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P holoenzyme in 5 mM Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9OWS|1|A|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OWS_004 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.5244

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9OWS|1|A|G|144
9OWS|1|A|G|145
9OWS|1|A|A|146
9OWS|1|A|A|147
9OWS|1|A|A|148
9OWS|1|A|G|149
*
9OWS|1|A|C|176
9OWS|1|A|G|177
9OWS|1|A|A|178
9OWS|1|A|U|179
9OWS|1|A|U|180
9OWS|1|A|A|181
9OWS|1|A|C|182

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains