IL_9OWT_003

3D structure

PDB id

9OWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with precursor tRNA in 5 mM Ca2+

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9OWT|1|A|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OWT_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.4821

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9OWT|1|A|G|144
9OWT|1|A|G|145
9OWT|1|A|A|146
9OWT|1|A|A|147
9OWT|1|A|A|148
9OWT|1|A|G|149
*
9OWT|1|A|C|176
9OWT|1|A|G|177
9OWT|1|A|A|178
9OWT|1|A|U|179
9OWT|1|A|U|180
9OWT|1|A|A|181
9OWT|1|A|C|182

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains