IL_9OWU_003

3D structure

PDB id

9OWU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with precursor tRNA in 1 mM Ca2+

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9OWU|1|A|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OWU_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.4848

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9OWU|1|A|G|144
9OWU|1|A|G|145
9OWU|1|A|A|146
9OWU|1|A|A|147
9OWU|1|A|A|148
9OWU|1|A|G|149
*
9OWU|1|A|C|176
9OWU|1|A|G|177
9OWU|1|A|A|178
9OWU|1|A|U|179
9OWU|1|A|U|180
9OWU|1|A|A|181
9OWU|1|A|C|182

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains