IL_9OWX_003

3D structure

PDB id

9OWX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with the precursor tRNA with loop-back 5' leader (sub-conformation 1 of tRNA anticodon arm tilted)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9OWX|1|A|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OWX_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.4894

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9OWX|1|A|G|144
9OWX|1|A|G|145
9OWX|1|A|A|146
9OWX|1|A|A|147
9OWX|1|A|A|148
9OWX|1|A|G|149
*
9OWX|1|A|C|176
9OWX|1|A|G|177
9OWX|1|A|A|178
9OWX|1|A|U|179
9OWX|1|A|U|180
9OWX|1|A|A|181
9OWX|1|A|C|182

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains