IL_9OWY_003

3D structure

PDB id

9OWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with the precursor tRNA with loop-back 5' leader (sub-conformation 2 of tRNA anticodon arm tilted)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9OWY|1|A|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OWY_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.4785

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9OWY|1|A|G|144
9OWY|1|A|G|145
9OWY|1|A|A|146
9OWY|1|A|A|147
9OWY|1|A|A|148
9OWY|1|A|G|149
*
9OWY|1|A|C|176
9OWY|1|A|G|177
9OWY|1|A|A|178
9OWY|1|A|U|179
9OWY|1|A|U|180
9OWY|1|A|A|181
9OWY|1|A|C|182

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains