IL_9OY2_003

3D structure

PDB id

9OY2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9OY2|1|A|U|179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OY2_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.5163

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9OY2|1|A|G|144
9OY2|1|A|G|145
9OY2|1|A|A|146
9OY2|1|A|A|147
9OY2|1|A|A|148
9OY2|1|A|G|149
*
9OY2|1|A|C|176
9OY2|1|A|G|177
9OY2|1|A|A|178
9OY2|1|A|U|179
9OY2|1|A|U|180
9OY2|1|A|A|181
9OY2|1|A|C|182

Current chains

Chain A

RNase P RNA component tetraloop mutant

Nearby chains