IL_9OY3_003

3D structure

PDB id

9OY3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGAAAG*CGAUUAC

Length

13 nucleotides

Bulged bases

9OY3|1|A|U|179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OY3_003 not in the Motif Atlas

Homologous match to IL_1NBS_007

Geometric discrepancy: 0.5513

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9OY3|1|A|G|144
9OY3|1|A|G|145
9OY3|1|A|A|146
9OY3|1|A|A|147
9OY3|1|A|A|148
9OY3|1|A|G|149
*
9OY3|1|A|C|176
9OY3|1|A|G|177
9OY3|1|A|A|178
9OY3|1|A|U|179
9OY3|1|A|U|180
9OY3|1|A|A|181
9OY3|1|A|C|182

Current chains

Chain A

RNase P RNA component tetraloop mutant

Nearby chains