IL_9OY4_002

3D structure

PDB id

9OY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

9OY4|1|A|A|137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OY4_002 not in the Motif Atlas

Geometric match to IL_1U9S_001

Geometric discrepancy: 0.2437

The information below is about IL_1U9S_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9OY4|1|A|G|114
9OY4|1|A|C|115
*
9OY4|1|A|G|136
9OY4|1|A|A|137
9OY4|1|A|C|138

Current chains

Chain A

RNase P RNA component tetraloop mutant

Nearby chains