IL_9OY4_005

3D structure

PDB id

9OY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

9OY4|1|A|A|239, 9OY4|1|A|A|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OY4_005 not in the Motif Atlas

Homologous match to IL_1NBS_009

Geometric discrepancy: 0.3334

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

9OY4|1|A|U|191
9OY4|1|A|G|192
*
9OY4|1|A|U|238
9OY4|1|A|A|239
9OY4|1|A|A|240
9OY4|1|A|A|241

Current chains

Chain A

RNase P RNA component tetraloop mutant

Nearby chains