IL_9P72_027

3D structure

PDB id

9P72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

9P72|1|L5|C|501, 9P72|1|L5|C|502, 9P72|1|L5|C|503, 9P72|1|L5|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P72_027 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2834

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

9P72|1|L5|G|500
9P72|1|L5|C|501
9P72|1|L5|C|502
9P72|1|L5|C|503
9P72|1|L5|G|504
9P72|1|L5|G|505
*
9P72|1|L5|U|653
9P72|1|L5|C|654

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18